Guide to the Human Genome
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Name: MAGEA8 Sequence: fasta or formatted (318aa) NCBI GI: 19923308
Description:

melanoma antigen family A, 8

Referenced in:

Melanoma Antigen Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         21           2
 C cysteine            0.6          2           1
 D aspartate           4.4         14           2
 E glutamate          11.3         36           3
 F phenylalanine       1.9          6           1
 G glycine             7.2         23           1
 H histidine           1.9          6           1
 I isoleucine          4.1         13           2
 K lysine              5.0         16           1
 L leucine            11.0         35           2
 M methionine          2.5          8           1
 N asparagine          1.6          5           1
 P proline             5.7         18           2
 Q glutamine           4.4         14           1
 R arginine            4.1         13           1
 S serine             10.7         34           4
 T threonine           4.4         14           1
 V valine              7.2         23           2
 W tryptophan          1.6          5           1
 Y tyrosine            3.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   melanoma antigen family A, 8 
MAGEA4                0.662   melanoma antigen family A, 4 
MAGEA4                0.662   melanoma antigen family A, 4 
MAGEA4                0.662   melanoma antigen family A, 4 
MAGEA4                0.662   melanoma antigen family A, 4 
MAGEA9B               0.616   melanoma antigen family A, 9 -like 
MAGEA9                0.616   melanoma antigen family A, 9 
MAGEA1                0.612   melanoma antigen family A, 1 
MAGEA12               0.594   melanoma antigen family A, 12 
MAGEA2                0.589   melanoma antigen family A, 2 
MAGEA2                0.589   melanoma antigen family A, 2 
MAGEA2                0.589   melanoma antigen family A, 2 
MAGEA2B               0.589   melanoma antigen family A, 2B 
MAGEA6                0.587   melanoma antigen family A, 6 
MAGEA6                0.587   melanoma antigen family A, 6 
MAGEA3                0.584   melanoma antigen family A, 3 
MAGEA11               0.569   melanoma antigen family A, 11 isoform b 
MAGEA11               0.569   melanoma antigen family A, 11 isoform a 
MAGEA10               0.536   melanoma antigen family A, 10 
MAGEA10               0.536   melanoma antigen family A, 10 
MAGEB16               0.419   melanoma antigen family B, 16 
MAGEB4                0.376   melanoma antigen family B, 4 
MAGEB17               0.375   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.375   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.375   PREDICTED: melanoma antigen family B, 17 
MAGEB1                0.373   melanoma antigen family B, 1 
MAGEB1                0.373   melanoma antigen family B, 1 
MAGEB1                0.373   melanoma antigen family B, 1 
MAGEB10               0.368   melanoma antigen family B, 10 
MAGEB18               0.365   melanoma antigen family B, 18 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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