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Search of human proteins with 197100526
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|197100526 Rieske (Fe-S) domain containing isoform 1 [Homo
sapiens]
(210 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|197100550 Rieske (Fe-S) domain containing isoform 1 [Homo sap... 444 e-125
gi|197100526 Rieske (Fe-S) domain containing isoform 1 [Homo sap... 444 e-125
gi|28603828 Rieske (Fe-S) domain containing isoform 2 [Homo sapi... 337 6e-93
gi|226437568 apoptosis-inducing factor, mitochondrion-associated... 39 0.002
gi|65787454 apoptosis-inducing factor, mitochondrion-associated,... 39 0.002
gi|21389617 apoptosis-inducing factor, mitochondrion-associated,... 39 0.002
gi|239746705 PREDICTED: hypothetical protein XP_002343815 [Homo ... 29 2.5
gi|10835015 gamma-aminobutyric acid (GABA) B receptor 1 isoform ... 29 3.3
gi|114431236 zinc finger protein 462 [Homo sapiens] 28 4.3
gi|10047102 ribosomal protein L24-like [Homo sapiens] 28 4.3
gi|92859701 myosin VI [Homo sapiens] 28 5.6
gi|118197272 ATG2 autophagy related 2 homolog B [Homo sapiens] 28 7.4
>gi|197100550 Rieske (Fe-S) domain containing isoform 1 [Homo
sapiens]
Length = 210
Score = 444 bits (1141), Expect = e-125
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MLKCFRNCLRPSSLSTLPLQYGILFPKLLACLVHLHFGHFSSAVISVTSFYLSMNLDGSA 60
MLKCFRNCLRPSSLSTLPLQYGILFPKLLACLVHLHFGHFSSAVISVTSFYLSMNLDGSA
Sbjct: 1 MLKCFRNCLRPSSLSTLPLQYGILFPKLLACLVHLHFGHFSSAVISVTSFYLSMNLDGSA 60
Query: 61 QDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLG 120
QDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLG
Sbjct: 61 QDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLG 120
Query: 121 DIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIHTVTVDNG 180
DIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIHTVTVDNG
Sbjct: 121 DIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIHTVTVDNG 180
Query: 181 NIYVTLSNEPFKCDSDFYATGDFKVIKSSS 210
NIYVTLSNEPFKCDSDFYATGDFKVIKSSS
Sbjct: 181 NIYVTLSNEPFKCDSDFYATGDFKVIKSSS 210
>gi|197100526 Rieske (Fe-S) domain containing isoform 1 [Homo
sapiens]
Length = 210
Score = 444 bits (1141), Expect = e-125
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MLKCFRNCLRPSSLSTLPLQYGILFPKLLACLVHLHFGHFSSAVISVTSFYLSMNLDGSA 60
MLKCFRNCLRPSSLSTLPLQYGILFPKLLACLVHLHFGHFSSAVISVTSFYLSMNLDGSA
Sbjct: 1 MLKCFRNCLRPSSLSTLPLQYGILFPKLLACLVHLHFGHFSSAVISVTSFYLSMNLDGSA 60
Query: 61 QDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLG 120
QDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLG
Sbjct: 61 QDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLG 120
Query: 121 DIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIHTVTVDNG 180
DIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIHTVTVDNG
Sbjct: 121 DIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIHTVTVDNG 180
Query: 181 NIYVTLSNEPFKCDSDFYATGDFKVIKSSS 210
NIYVTLSNEPFKCDSDFYATGDFKVIKSSS
Sbjct: 181 NIYVTLSNEPFKCDSDFYATGDFKVIKSSS 210
>gi|28603828 Rieske (Fe-S) domain containing isoform 2 [Homo
sapiens]
Length = 157
Score = 337 bits (863), Expect = 6e-93
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 54 MNLDGSAQDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHS 113
MNLDGSAQDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHS
Sbjct: 1 MNLDGSAQDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHS 60
Query: 114 GGPLHLGDIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIH 173
GGPLHLGDIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIH
Sbjct: 61 GGPLHLGDIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIH 120
Query: 174 TVTVDNGNIYVTLSNEPFKCDSDFYATGDFKVIKSSS 210
TVTVDNGNIYVTLSNEPFKCDSDFYATGDFKVIKSSS
Sbjct: 121 TVTVDNGNIYVTLSNEPFKCDSDFYATGDFKVIKSSS 157
>gi|226437568 apoptosis-inducing factor, mitochondrion-associated, 3
isoform 3 [Homo sapiens]
Length = 604
Score = 39.3 bits (90), Expect = 0.002
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 63 PEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLGDI 122
P ++ V D++ + + +V++ GE+HA+ +C H G PL G +
Sbjct: 68 PSPQDCVEAAVCHVKDLENGQMREVELGWGKVLLVKDNGEFHALGHKCPHYGAPLVKGVL 127
Query: 123 EDFDGRPCIVCPWHKYKITLATGE 146
R + CPWH ++TG+
Sbjct: 128 ----SRGRVRCPWHGACFNISTGD 147
>gi|65787454 apoptosis-inducing factor, mitochondrion-associated, 3
isoform 2 [Homo sapiens]
Length = 598
Score = 39.3 bits (90), Expect = 0.002
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 63 PEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLGDI 122
P ++ V D++ + + +V++ GE+HA+ +C H G PL G +
Sbjct: 62 PSPQDCVEAAVCHVKDLENGQMREVELGWGKVLLVKDNGEFHALGHKCPHYGAPLVKGVL 121
Query: 123 EDFDGRPCIVCPWHKYKITLATGE 146
R + CPWH ++TG+
Sbjct: 122 ----SRGRVRCPWHGACFNISTGD 141
>gi|21389617 apoptosis-inducing factor, mitochondrion-associated, 3
isoform 1 [Homo sapiens]
Length = 605
Score = 39.3 bits (90), Expect = 0.002
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 63 PEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLGDI 122
P ++ V D++ + + +V++ GE+HA+ +C H G PL G +
Sbjct: 62 PSPQDCVEAAVCHVKDLENGQMREVELGWGKVLLVKDNGEFHALGHKCPHYGAPLVKGVL 121
Query: 123 EDFDGRPCIVCPWHKYKITLATGE 146
R + CPWH ++TG+
Sbjct: 122 ----SRGRVRCPWHGACFNISTGD 141
>gi|239746705 PREDICTED: hypothetical protein XP_002343815 [Homo
sapiens]
Length = 411
Score = 29.3 bits (64), Expect = 2.5
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 131 IVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIHTVTVD 178
++C + + GEG+ ++ P P +P+ CS + R HT + D
Sbjct: 56 VLCIQELRAVRMGPGEGVLRATGP-GPDVQPQMCSNISRARAHTYSAD 102
>gi|10835015 gamma-aminobutyric acid (GABA) B receptor 1 isoform a
precursor [Homo sapiens]
Length = 961
Score = 28.9 bits (63), Expect = 3.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 14/60 (23%)
Query: 157 PSAKPKWCSKGIKQRIHTVTVDNGNIYVTLSNEP--------FKCDSDFYATGDFKVIKS 208
PS + CSK +T++NG +++T + P F+CD DF+ G + I S
Sbjct: 93 PSRCVRICSKSY------LTLENGKVFLTGGDLPALDGARVDFRCDPDFHLVGSSRSICS 146
>gi|114431236 zinc finger protein 462 [Homo sapiens]
Length = 2506
Score = 28.5 bits (62), Expect = 4.3
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 54 MNLDGSAQDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKG 101
+NLD Q EK E SS DD K E M + DRE++ F G
Sbjct: 2363 VNLDQLEQMKEKMESSS-----SDDEDKEEEMNSKAEDRELMRFSDHG 2405
>gi|10047102 ribosomal protein L24-like [Homo sapiens]
Length = 163
Score = 28.5 bits (62), Expect = 4.3
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 109 RCYHSGGPLHLGDIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGI 168
+CY GP++ G F C V + K K +++ K K +W
Sbjct: 5 KCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKC--------HKNFKKKRNPRKVRWTKAFR 56
Query: 169 KQRIHTVTVDNGNIYVTLSNEPFKCDSDFY 198
K +TVDN + NEP K + +
Sbjct: 57 KAAGKELTVDNSFEFEKRRNEPIKYQRELW 86
>gi|92859701 myosin VI [Homo sapiens]
Length = 1285
Score = 28.1 bits (61), Expect = 5.6
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 33 VHLHFGHFSSAVISVTSFYLSMNLDGSAQDPEKREYS---SVCVGREDDIKKSERMTA 87
V +HF SS V S YL Q E+R Y +C G +DI++ +++
Sbjct: 210 VEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIREKLHLSS 267
>gi|118197272 ATG2 autophagy related 2 homolog B [Homo sapiens]
Length = 2078
Score = 27.7 bits (60), Expect = 7.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 150 QSINPKDPSAKPKWCSKGIKQRIHTVTVDNGNIYVTLSNEPF 191
Q + P DP ++ K I + + + NIYVTL N+ F
Sbjct: 912 QMVMPGDPVEMTEFQDKAISNSHYVLELTLPNIYVTLPNKSF 953
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,632,042
Number of Sequences: 37866
Number of extensions: 396626
Number of successful extensions: 786
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 776
Number of HSP's gapped (non-prelim): 12
length of query: 210
length of database: 18,247,518
effective HSP length: 98
effective length of query: 112
effective length of database: 14,536,650
effective search space: 1628104800
effective search space used: 1628104800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.