Guide to the Human Genome
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Name: CYTB Sequence: fasta or formatted (378aa) NCBI GI: 196123591
Description:

cytochrome b

Homo sapiens neanderthalensis sequence

Other entries for this name:
alt prot [380aa] cytochrome b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         25           2
 C cysteine            0.5          2           1
 D aspartate           2.9         11           1
 E glutamate           0.8          3           1
 F phenylalanine       6.3         24           2
 G glycine             6.3         24           2
 H histidine           3.2         12           1
 I isoleucine         10.6         40           3
 K lysine              2.6         10           1
 L leucine            16.9         64           3
 M methionine          3.7         14           2
 N asparagine          4.0         15           2
 P proline             6.1         23           2
 Q glutamine           2.1          8           2
 R arginine            1.9          7           1
 S serine              7.7         29           2
 T threonine           7.4         28           2
 V valine              2.9         11           1
 W tryptophan          2.9         11           2
 Y tyrosine            4.5         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cytochrome b 
CYTB                  0.984   cytochrome b 
OR8D2                 0.009   olfactory receptor, family 8, subfamily D, member 2 ...
SV2A                  0.007   synaptic vesicle glycoprotein 2 
SVOPL                 0.007   SVOP-like isoform 1 
OR8I2                 0.007   olfactory receptor, family 8, subfamily I, member 2 ...
ATP10A                0.007   ATPase, class V, type 10A 
ENTPD8                0.005   ectonucleoside triphosphate diphosphohydrolase 8 is...
ENTPD8                0.005   ectonucleoside triphosphate diphosphohydrolase 8 is...
TAS2R13               0.005   taste receptor, type 2, member 13 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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