Search of human proteins with 195972879

Search of human proteins with 195972879

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|195972879 transmembrane protein 194A isoform b [Homo
sapiens]
         (371 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|195972879 transmembrane protein 194A isoform b [Homo sapiens]      754   0.0  
gi|195972881 transmembrane protein 194A isoform a [Homo sapiens]      635   0.0  
gi|217416356 transmembrane protein 194B [Homo sapiens]                213   2e-55
gi|167003762 hypothetical protein LOC645090 [Homo sapiens]             31   1.6  
gi|89886480 zinedin isoform 2 [Homo sapiens]                           30   2.7  
gi|89886477 zinedin isoform 1 [Homo sapiens]                           30   2.7  
gi|150421681 ATPase, class VI, type 11A isoform b [Homo sapiens]       30   4.5  
gi|150421684 ATPase, class VI, type 11A isoform a [Homo sapiens]       30   4.5  
gi|251823730 cat eye syndrome chromosome region, candidate 6 iso...    29   5.9  
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof...    29   5.9  
gi|122937233 discs, large (Drosophila) homolog-associated protei...    29   5.9  
gi|74271832 G protein-coupled receptor 155 isoform 9 [Homo sapiens]    29   7.8  
gi|74271834 G protein-coupled receptor 155 isoform 10 [Homo sapi...    29   7.8  

>gi|195972879 transmembrane protein 194A isoform b [Homo sapiens]
          Length = 371

 Score =  754 bits (1948), Expect = 0.0
 Identities = 371/371 (100%), Positives = 371/371 (100%)

Query: 1   MAGGMKVAVSPAVGPGPWGSGVGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEK 60
           MAGGMKVAVSPAVGPGPWGSGVGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEK
Sbjct: 1   MAGGMKVAVSPAVGPGPWGSGVGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEK 60

Query: 61  RASQQFCYTNVLIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQSQIFYYSTGMT 120
           RASQQFCYTNVLIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQSQIFYYSTGMT
Sbjct: 61  RASQQFCYTNVLIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQSQIFYYSTGMT 120

Query: 121 VGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSY 180
           VGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSY
Sbjct: 121 VGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSY 180

Query: 181 VLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALCTK 240
           VLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALCTK
Sbjct: 181 VLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALCTK 240

Query: 241 NLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFCNSPDCSA 300
           NLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFCNSPDCSA
Sbjct: 241 NLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFCNSPDCSA 300

Query: 301 WKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIYEEASSEEEDSYSR 360
           WKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIYEEASSEEEDSYSR
Sbjct: 301 WKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIYEEASSEEEDSYSR 360

Query: 361 CPAITQNNFLT 371
           CPAITQNNFLT
Sbjct: 361 CPAITQNNFLT 371


>gi|195972881 transmembrane protein 194A isoform a [Homo sapiens]
          Length = 444

 Score =  635 bits (1639), Expect = 0.0
 Identities = 335/444 (75%), Positives = 349/444 (78%), Gaps = 73/444 (16%)

Query: 1   MAGGMKVAVSPAVGPGPWGSGVGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEK 60
           MAGGMKVAVSPAVGPGPWGSGVGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEK
Sbjct: 1   MAGGMKVAVSPAVGPGPWGSGVGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEK 60

Query: 61  RASQQFCYTNVLIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQSQIFYY----- 115
           RASQQFCYTNVLIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQ  I+ +     
Sbjct: 61  RASQQFCYTNVLIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQFSIWNFFSSFL 120

Query: 116 -----STGMTVGIVASLLII------------IFILSKFMPK------------------ 140
                 T + VG+ ++   +            + ++ +F PK                  
Sbjct: 121 KEKLNDTYVNVGLYSTKTCLKVEIIEKDTKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLL 180

Query: 141 -KSPIYVILVG---GWSFSLYLI-----------------------------QLVFKNLQ 167
            +S I+    G   G   SL +I                             QLVFKNLQ
Sbjct: 181 SRSQIFYYSTGMTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQ 240

Query: 168 EIWRCYWQYLLSYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPH 227
           EIWRCYWQYLLSYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPH
Sbjct: 241 EIWRCYWQYLLSYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPH 300

Query: 228 IALAIIIIALCTKNLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALE 287
           IALAIIIIALCTKNLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALE
Sbjct: 301 IALAIIIIALCTKNLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALE 360

Query: 288 ELREFCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIY 347
           ELREFCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIY
Sbjct: 361 ELREFCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIY 420

Query: 348 EEASSEEEDSYSRCPAITQNNFLT 371
           EEASSEEEDSYSRCPAITQNNFLT
Sbjct: 421 EEASSEEEDSYSRCPAITQNNFLT 444


>gi|217416356 transmembrane protein 194B [Homo sapiens]
          Length = 417

 Score =  213 bits (542), Expect = 2e-55
 Identities = 98/249 (39%), Positives = 163/249 (65%), Gaps = 1/249 (0%)

Query: 105 KELEQSQIFYYSTGMTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFK 164
           + L QS  FYYS+G  +G++ +L+ ++ ++ +F+PK S  + ++VG W  S+Y++  + +
Sbjct: 169 RTLSQSPTFYYSSGTVLGVLMTLVFVLLLVKRFIPKYSTFWALMVGCWFASVYIVCQLME 228

Query: 165 NLQEIWRCYWQYLLSYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQ 224
           +L+ +W     Y+L YVL VGF SF VCYK+GPL ++RS +LL W L+L+ L  +Y+G+ 
Sbjct: 229 DLKWLWYENRIYVLGYVLIVGFFSFVVCYKHGPLADDRSRSLLMWMLRLLSLVLVYAGVA 288

Query: 225 IPHIALAIIIIALCTKNLEHPIQ-WLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETR 283
           +P  A A II+ + + +L +P++   Y+  +       K +  + LTE+EYR Q + ET 
Sbjct: 289 VPQFAYAAIILLMSSWSLHYPLRACSYMRWKMEQWFTSKELVVKYLTEDEYREQADAETN 348

Query: 284 KALEELREFCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQ 343
            ALEELR  C  PD  +W  VSR+ +P +FADFV G SHL+P E+S+HE++YGLG    +
Sbjct: 349 SALEELRRACRKPDFPSWLVVSRLHTPSKFADFVLGGSHLSPEEISLHEEQYGLGGAFLE 408

Query: 344 DEIYEEASS 352
           ++++  +++
Sbjct: 409 EQLFNPSTA 417


>gi|167003762 hypothetical protein LOC645090 [Homo sapiens]
          Length = 633

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 33/115 (28%), Positives = 42/115 (36%), Gaps = 22/115 (19%)

Query: 52  LQESQVCEKRASQQFCYTNVLIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQSQ 111
           L E  V  KR S  FC     IPK H+    IQ                 E +K   +S 
Sbjct: 377 LTEVLVIPKRNSHNFCEDPNEIPKIHEFEYEIQF--------------ESEAMKSKLESC 422

Query: 112 IFYYSTGMTVGIVASLLIIIFILSKFMPKKS-------PIYVILVGGWSFSLYLI 159
           +  Y    +  I+A  +  IF L  F PKK         I  +  G W F + LI
Sbjct: 423 VALYMIEKSYDIMAKRITFIFNL-VFTPKKPLRSHITLKIECVTEGIWKFPIMLI 476


>gi|89886480 zinedin isoform 2 [Homo sapiens]
          Length = 760

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 12/18 (66%), Positives = 14/18 (77%)

Query: 10 SPAVGPGPWGSGVGGGGT 27
          +PA GPGP G G GGGG+
Sbjct: 36 APAPGPGPAGKGGGGGGS 53


>gi|89886477 zinedin isoform 1 [Homo sapiens]
          Length = 753

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 12/18 (66%), Positives = 14/18 (77%)

Query: 10 SPAVGPGPWGSGVGGGGT 27
          +PA GPGP G G GGGG+
Sbjct: 36 APAPGPGPAGKGGGGGGS 53


>gi|150421681 ATPase, class VI, type 11A isoform b [Homo sapiens]
          Length = 1191

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 257 CKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFC 293
           CKGA+  + PR++  +  +I+  VE R A+E LR  C
Sbjct: 575 CKGADSSIFPRVIEGKVDQIRARVE-RNAVEGLRTLC 610


>gi|150421684 ATPase, class VI, type 11A isoform a [Homo sapiens]
          Length = 1134

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 257 CKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFC 293
           CKGA+  + PR++  +  +I+  VE R A+E LR  C
Sbjct: 575 CKGADSSIFPRVIEGKVDQIRARVE-RNAVEGLRTLC 610


>gi|251823730 cat eye syndrome chromosome region, candidate 6
           isoform b [Homo sapiens]
          Length = 223

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 12  AVGPGPWGSGVGGGGTVRLLLILSGCLV 39
           A     WG   G G   RLL +L GCLV
Sbjct: 95  AAAAASWGQASGPGSCSRLLRLLGGCLV 122


>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
           a [Homo sapiens]
          Length = 578

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 12  AVGPGPWGSGVGGGGTVRLLLILSGCLV 39
           A     WG   G G   RLL +L GCLV
Sbjct: 450 AAAAASWGQASGPGSCSRLLRLLGGCLV 477


>gi|122937233 discs, large (Drosophila) homolog-associated protein
          3 [Homo sapiens]
          Length = 979

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)

Query: 3  GGMKVAVSPAVGP--GPWGSGVGGGGT 27
          G + ++  P+VGP  GP G+GVGGG +
Sbjct: 61 GPLSLSEGPSVGPEGGPAGAGVGGGSS 87


>gi|74271832 G protein-coupled receptor 155 isoform 9 [Homo sapiens]
          Length = 870

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 115 YSTGMTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLI 159
           YST +  G++A   I +F+L K    + P+ +I++ GW     L+
Sbjct: 455 YSTYLWTGLLA---ISLFLLKKRERVQIPVGIIIISGWGIPALLV 496


>gi|74271834 G protein-coupled receptor 155 isoform 10 [Homo
           sapiens]
          Length = 870

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 115 YSTGMTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLI 159
           YST +  G++A   I +F+L K    + P+ +I++ GW     L+
Sbjct: 455 YSTYLWTGLLA---ISLFLLKKRERVQIPVGIIIISGWGIPALLV 496


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,359,926
Number of Sequences: 37866
Number of extensions: 628221
Number of successful extensions: 2301
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2288
Number of HSP's gapped (non-prelim): 15
length of query: 371
length of database: 18,247,518
effective HSP length: 104
effective length of query: 267
effective length of database: 14,309,454
effective search space: 3820624218
effective search space used: 3820624218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.