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Search of human proteins with 195927027
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|195927027 Cas-Br-M (murine) ecotropic retroviral
transforming sequence c isoform 1 [Homo sapiens]
(474 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming... 991 0.0
gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming... 853 0.0
gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming ... 422 e-118
gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming ... 411 e-115
gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens] 55 2e-07
gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens] 55 2e-07
gi|5902054 ring finger protein 5 [Homo sapiens] 47 3e-05
gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo sapi... 47 5e-05
gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens] 47 5e-05
gi|21071001 autocrine motility factor receptor [Homo sapiens] 46 6e-05
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 46 8e-05
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 46 8e-05
gi|66571327 ring finger protein 213 [Homo sapiens] 45 1e-04
gi|21389515 ring finger protein 145 [Homo sapiens] 45 2e-04
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens] 44 2e-04
gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens] 44 2e-04
gi|239048909 checkpoint with forkhead and ring finger domains is... 42 0.001
gi|239048905 checkpoint with forkhead and ring finger domains is... 42 0.001
gi|239048862 checkpoint with forkhead and ring finger domains is... 42 0.001
gi|239048792 checkpoint with forkhead and ring finger domains is... 42 0.001
gi|239048907 checkpoint with forkhead and ring finger domains is... 42 0.001
gi|14149702 ring finger protein 167 [Homo sapiens] 42 0.001
gi|30794216 tripartite motif-containing 56 [Homo sapiens] 42 0.002
gi|31377566 ring finger protein 168 [Homo sapiens] 41 0.002
gi|148839382 ring finger protein 169 [Homo sapiens] 41 0.002
gi|58331204 ring finger protein 150 [Homo sapiens] 41 0.003
gi|11545910 livin inhibitor of apoptosis isoform beta [Homo sapi... 40 0.004
gi|87241872 ring finger protein 151 [Homo sapiens] 40 0.005
gi|32454739 tripartite motif-containing 3 [Homo sapiens] 40 0.006
gi|32454737 tripartite motif-containing 3 [Homo sapiens] 40 0.006
>gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 1 [Homo sapiens]
Length = 474
Score = 991 bits (2563), Expect = 0.0
Identities = 474/474 (100%), Positives = 474/474 (100%)
Query: 1 MALAVAPWGRQWEEARALGRAVRMLQRLEEQCVDPRLSVSPPSLRDLLPRTAQLLREVAH 60
MALAVAPWGRQWEEARALGRAVRMLQRLEEQCVDPRLSVSPPSLRDLLPRTAQLLREVAH
Sbjct: 1 MALAVAPWGRQWEEARALGRAVRMLQRLEEQCVDPRLSVSPPSLRDLLPRTAQLLREVAH 60
Query: 61 SRRAAGGGGPGGPGGSGDFLLIYLANLEAKSRQVAALLPPRGRRSANDELFRAGSRLRRQ 120
SRRAAGGGGPGGPGGSGDFLLIYLANLEAKSRQVAALLPPRGRRSANDELFRAGSRLRRQ
Sbjct: 61 SRRAAGGGGPGGPGGSGDFLLIYLANLEAKSRQVAALLPPRGRRSANDELFRAGSRLRRQ 120
Query: 121 LAKLAIIFSHMHAELHALFPGGKYCGHMYQLTKAPAHTFWRESCGARCVLPWAEFESLLG 180
LAKLAIIFSHMHAELHALFPGGKYCGHMYQLTKAPAHTFWRESCGARCVLPWAEFESLLG
Sbjct: 121 LAKLAIIFSHMHAELHALFPGGKYCGHMYQLTKAPAHTFWRESCGARCVLPWAEFESLLG 180
Query: 181 TCHPVEPGCTALALRTTIDLTCSGHVSIFEFDVFTRLFQPWPTLLKNWQLLAVNHPGYMA 240
TCHPVEPGCTALALRTTIDLTCSGHVSIFEFDVFTRLFQPWPTLLKNWQLLAVNHPGYMA
Sbjct: 181 TCHPVEPGCTALALRTTIDLTCSGHVSIFEFDVFTRLFQPWPTLLKNWQLLAVNHPGYMA 240
Query: 241 FLTYDEVQERLQACRDKPGSYIFRPSCTRLGQWAIGYVSSDGSILQTIPANKPLSQVLLE 300
FLTYDEVQERLQACRDKPGSYIFRPSCTRLGQWAIGYVSSDGSILQTIPANKPLSQVLLE
Sbjct: 241 FLTYDEVQERLQACRDKPGSYIFRPSCTRLGQWAIGYVSSDGSILQTIPANKPLSQVLLE 300
Query: 301 GQKDGFYLYPDGKTHNPDLTELGQAEPQQRIHVSEEQLQLYWAMDSTFELCKICAESNKD 360
GQKDGFYLYPDGKTHNPDLTELGQAEPQQRIHVSEEQLQLYWAMDSTFELCKICAESNKD
Sbjct: 301 GQKDGFYLYPDGKTHNPDLTELGQAEPQQRIHVSEEQLQLYWAMDSTFELCKICAESNKD 360
Query: 361 VKIEPCGHLLCSCCLAAWQHSDSQTCPFCRCEIKGWEAVSIYQFHGQATAEDSGNSSDQE 420
VKIEPCGHLLCSCCLAAWQHSDSQTCPFCRCEIKGWEAVSIYQFHGQATAEDSGNSSDQE
Sbjct: 361 VKIEPCGHLLCSCCLAAWQHSDSQTCPFCRCEIKGWEAVSIYQFHGQATAEDSGNSSDQE 420
Query: 421 GRELELGQVPLSAPPLPPRPDLPPRKPRNAQPKVRLLKGNSPPAALGPQDPAPA 474
GRELELGQVPLSAPPLPPRPDLPPRKPRNAQPKVRLLKGNSPPAALGPQDPAPA
Sbjct: 421 GRELELGQVPLSAPPLPPRPDLPPRKPRNAQPKVRLLKGNSPPAALGPQDPAPA 474
>gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 2 [Homo sapiens]
Length = 428
Score = 853 bits (2205), Expect = 0.0
Identities = 421/474 (88%), Positives = 423/474 (89%), Gaps = 46/474 (9%)
Query: 1 MALAVAPWGRQWEEARALGRAVRMLQRLEEQCVDPRLSVSPPSLRDLLPRTAQLLREVAH 60
MALAVAPWGRQWEEARALGRAVRMLQRLEEQCVDPRLSVSPPSLRDLLPRTAQLLREVAH
Sbjct: 1 MALAVAPWGRQWEEARALGRAVRMLQRLEEQCVDPRLSVSPPSLRDLLPRTAQLLREVAH 60
Query: 61 SRRAAGGGGPGGPGGSGDFLLIYLANLEAKSRQVAALLPPRGRRSANDELFRAGSRLRRQ 120
SRRAAGGGGPGGPGGSGDFLLIYLANLEAKSRQVAALLPPRGRRSANDELFRAGSRLRRQ
Sbjct: 61 SRRAAGGGGPGGPGGSGDFLLIYLANLEAKSRQVAALLPPRGRRSANDELFRAGSRLRRQ 120
Query: 121 LAKLAIIFSHMHAELHALFPGGKYCGHMYQLTKAPAHTFWRESCGARCVLPWAEFESLLG 180
LAKLAIIFSHMHAELHALFPGGKYCGHMYQLTKAPAHTFWRESCGARCVLPWAEFESLLG
Sbjct: 121 LAKLAIIFSHMHAELHALFPGGKYCGHMYQLTKAPAHTFWRESCGARCVLPWAEFESLLG 180
Query: 181 TCHPVEPGCTALALRTTIDLTCSGHVSIFEFDVFTRLFQPWPTLLKNWQLLAVNHPGYMA 240
TCHPVEPGCTALALRTTIDLTCSGHVSIFEFDVFTRLFQPWPTLLKNWQLLAVNHPGYMA
Sbjct: 181 TCHPVEPGCTALALRTTIDLTCSGHVSIFEFDVFTRLFQPWPTLLKNWQLLAVNHPGYMA 240
Query: 241 FLTYDEVQERLQACRDKPGSYIFRPSCTRLGQWAIGYVSSDGSILQTIPANKPLSQVLLE 300
FLTYDEVQERLQACRDKPGSY++
Sbjct: 241 FLTYDEVQERLQACRDKPGSYLY------------------------------------- 263
Query: 301 GQKDGFYLYPDGKTHNPDLTELGQAEPQQRIHVSEEQLQLYWAMDSTFELCKICAESNKD 360
DG PD LTELGQAEPQQRIHVSEEQLQLYWAMDSTFELCKICAESNKD
Sbjct: 264 --PDGKTHNPD-------LTELGQAEPQQRIHVSEEQLQLYWAMDSTFELCKICAESNKD 314
Query: 361 VKIEPCGHLLCSCCLAAWQHSDSQTCPFCRCEIKGWEAVSIYQFHGQATAEDSGNSSDQE 420
VKIEPCGHLLCSCCLAAWQHSDSQTCPFCRCEIKGWEAVSIYQFHGQATAEDSGNSSDQE
Sbjct: 315 VKIEPCGHLLCSCCLAAWQHSDSQTCPFCRCEIKGWEAVSIYQFHGQATAEDSGNSSDQE 374
Query: 421 GRELELGQVPLSAPPLPPRPDLPPRKPRNAQPKVRLLKGNSPPAALGPQDPAPA 474
GRELELGQVPLSAPPLPPRPDLPPRKPRNAQPKVRLLKGNSPPAALGPQDPAPA
Sbjct: 375 GRELELGQVPLSAPPLPPRPDLPPRKPRNAQPKVRLLKGNSPPAALGPQDPAPA 428
>gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming
sequence [Homo sapiens]
Length = 906
Score = 422 bits (1085), Expect = e-118
Identities = 210/449 (46%), Positives = 286/449 (63%), Gaps = 33/449 (7%)
Query: 23 RMLQRLEEQCVDPRLSV--SPPSLRDLLPRTAQLLREVAHSRRAAGGGGPGGPGGSGDFL 80
+++ ++ C +P+L++ SPP + DLLP T Q LR + G G ++
Sbjct: 61 KLMDKVVRLCQNPKLALKNSPPYILDLLPDTYQHLRTILSRYE-----GKMETLGENEYF 115
Query: 81 LIYLANLEAKSRQVAALLPPRGRRSANDELFRAGSRLRRQLAKLAIIFSHMHAELHALFP 140
+++ NL K++Q +L + + ++ S+ RR L KL++IFSHM AEL +FP
Sbjct: 116 RVFMENLMKKTKQTISLF-----KEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFP 170
Query: 141 GGKYCGHMYQLTKAPAHTFWRESCGARCVLPWAEFESLLGTCHPVEPGCTALALRTTIDL 200
G + G +++TKA A FWR++ G + ++PW F L HP+ G A+AL++TIDL
Sbjct: 171 SGLFQGDTFRITKADAAEFWRKAFGEKTIVPWKSFRQALHEVHPISSGLEAMALKSTIDL 230
Query: 201 TCSGHVSIFEFDVFTRLFQPWPTLLKNWQLLAVNHPGYMAFLTYDEVQERLQACRDKPGS 260
TC+ ++S+FEFD+FTRLFQPW +LL+NW LAV HPGYMAFLTYDEV+ RLQ KPGS
Sbjct: 231 TCNDYISVFEFDIFTRLFQPWSSLLRNWNSLAVTHPGYMAFLTYDEVKARLQKFIHKPGS 290
Query: 261 YIFRPSCTRLGQWAIGYVSSDGSILQTIPANKPLSQVLLEGQKDGFYLYPDGKTHNPDLT 320
YIFR SCTRLGQWAIGYV++DG+ILQTIP NKPL Q L++G ++GFYL+PDG+ NPDLT
Sbjct: 291 YIFRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDGFREGFYLFPDGRNQNPDLT 350
Query: 321 ELGQAEPQQRIHVSEEQLQLYWAMDSTFELCKICAESNKDVKIEPCGHLLCSCCLAAWQH 380
L + PQ I V++EQ +LY M STF+LCKICAE++KDVKIEPCGHL+C+ CL +WQ
Sbjct: 351 GLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQE 410
Query: 381 SDSQTCPFCRCEIKGWEAVSIYQFHGQATA-----------------EDSGNSSDQEGRE 423
S+ Q CPFCRCEIKG E + + F + + +D + D
Sbjct: 411 SEGQGCPFCRCEIKGTEPIVVDPFDPRGSGSLLRQGAEGAPSPNYDDDDDERADDTLFMM 470
Query: 424 LELGQVPLSAPPLP----PRPDLPPRKPR 448
EL + PP P P+ LPP PR
Sbjct: 471 KELAGAKVERPPSPFSMAPQASLPPVPPR 499
>gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming
sequence b [Homo sapiens]
Length = 982
Score = 411 bits (1057), Expect = e-115
Identities = 199/403 (49%), Positives = 271/403 (67%), Gaps = 10/403 (2%)
Query: 4 AVAPWGRQWEEARALGRAVRMLQRLEEQCVDPRLSV--SPPSLRDLLPRTAQLLREVAHS 61
AV P + + R + + +++ ++ C +P+L + SPP + D+LP T Q LR +
Sbjct: 32 AVGPPKQAAADRRTVEKTWKLMDKVVRLCQNPKLQLKNSPPYILDILPDTYQHLRLILSK 91
Query: 62 RRAAGGGGPGGPGGSGDFLLIYLANLEAKSRQVAALLPPRGRRSANDELFRAGSRLRRQL 121
++ IY+ +L KS++ L + + ++ S+ RR L
Sbjct: 92 Y---DDNQKLAQLSENEYFKIYIDSLMKKSKRAIRLF-----KEGKERMYEEQSQDRRNL 143
Query: 122 AKLAIIFSHMHAELHALFPGGKYCGHMYQLTKAPAHTFWRESCGARCVLPWAEFESLLGT 181
KL++IFSHM AE+ A+FP G++ G +++TKA A FWR+ G + ++PW F L
Sbjct: 144 TKLSLIFSHMLAEIKAIFPNGQFQGDNFRITKADAAEFWRKFFGDKTIVPWKVFRQCLHE 203
Query: 182 CHPVEPGCTALALRTTIDLTCSGHVSIFEFDVFTRLFQPWPTLLKNWQLLAVNHPGYMAF 241
H + G A+AL++TIDLTC+ ++S+FEFD+FTRLFQPW ++L+NW LAV HPGYMAF
Sbjct: 204 VHQISSGLEAMALKSTIDLTCNDYISVFEFDIFTRLFQPWGSILRNWNFLAVTHPGYMAF 263
Query: 242 LTYDEVQERLQACRDKPGSYIFRPSCTRLGQWAIGYVSSDGSILQTIPANKPLSQVLLEG 301
LTYDEV+ RLQ KPGSYIFR SCTRLGQWAIGYV+ DG+ILQTIP NKPL Q L++G
Sbjct: 264 LTYDEVKARLQKYSTKPGSYIFRLSCTRLGQWAIGYVTGDGNILQTIPHNKPLFQALIDG 323
Query: 302 QKDGFYLYPDGKTHNPDLTELGQAEPQQRIHVSEEQLQLYWAMDSTFELCKICAESNKDV 361
++GFYLYPDG+++NPDLT L + P I V++EQ +LY M STF+LCKICAE++KDV
Sbjct: 324 SREGFYLYPDGRSYNPDLTGLCEPTPHDHIKVTQEQYELYCEMGSTFQLCKICAENDKDV 383
Query: 362 KIEPCGHLLCSCCLAAWQHSDSQTCPFCRCEIKGWEAVSIYQF 404
KIEPCGHL+C+ CL AWQ SD Q CPFCRCEIKG E + + F
Sbjct: 384 KIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIKGTEPIIVDPF 426
>gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 54.7 bits (130), Expect = 2e-07
Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Query: 345 DSTFELCKICAESNKDVKIEPCGHLLCSCCLAAWQHS--DSQTCPFCRCEIKGWEAVSIY 402
DSTFE C IC ++ KD I CGHL C CL W + + Q CP C+ I + + +Y
Sbjct: 34 DSTFE-CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLY 92
Query: 403 QFHGQATAEDSGNSSDQEGRELELGQVPLSAPPLPPRPDLPPRKPRN 449
G++ Q+ RE PPRP +P N
Sbjct: 93 ---------GRGSTGQQDPRE-----------KTPPRPQGQRPEPEN 119
>gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 54.7 bits (130), Expect = 2e-07
Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Query: 345 DSTFELCKICAESNKDVKIEPCGHLLCSCCLAAWQHS--DSQTCPFCRCEIKGWEAVSIY 402
DSTFE C IC ++ KD I CGHL C CL W + + Q CP C+ I + + +Y
Sbjct: 34 DSTFE-CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLY 92
Query: 403 QFHGQATAEDSGNSSDQEGRELELGQVPLSAPPLPPRPDLPPRKPRN 449
G++ Q+ RE PPRP +P N
Sbjct: 93 ---------GRGSTGQQDPRE-----------KTPPRPQGQRPEPEN 119
>gi|5902054 ring finger protein 5 [Homo sapiens]
Length = 180
Score = 47.4 bits (111), Expect = 3e-05
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 20/109 (18%)
Query: 346 STFELCKICAESNKDVKIEPCGHLLCSCCLAAWQHS--DSQTCPFCRCEIKGWEAVSIYQ 403
+TFE C IC E+ ++ + CGHL C CL W + + Q CP C+ I + V +Y
Sbjct: 23 ATFE-CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLY- 80
Query: 404 FHGQATAEDSGNSSDQEGRELELGQVPLSAPPLPPRPDLPPRKPRNAQP 452
G+ Q+ R L PP P P QP
Sbjct: 81 --------GRGSQKPQDPR--------LKTPPRPQGQRPAPESRGGFQP 113
>gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo
sapiens]
Length = 346
Score = 46.6 bits (109), Expect = 5e-05
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 324 QAEPQQRIH--VSEEQLQLYWAMDSTFELCKICAESNKDVKIEPCGHLLCSCCLAAWQHS 381
+A + R+H +S + L S LC +C E + PCGHL C C+ AW S
Sbjct: 264 RARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSS 323
Query: 382 DSQTCPFCR 390
++ CP CR
Sbjct: 324 KAE-CPLCR 331
>gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens]
Length = 326
Score = 46.6 bits (109), Expect = 5e-05
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 324 QAEPQQRIH--VSEEQLQLYWAMDSTFELCKICAESNKDVKIEPCGHLLCSCCLAAWQHS 381
+A + R+H +S + L S LC +C E + PCGHL C C+ AW S
Sbjct: 244 RARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSS 303
Query: 382 DSQTCPFCR 390
++ CP CR
Sbjct: 304 KAE-CPLCR 311
>gi|21071001 autocrine motility factor receptor [Homo sapiens]
Length = 643
Score = 46.2 bits (108), Expect = 6e-05
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 27/126 (21%)
Query: 326 EPQQRIHVSEEQLQLYWAMDSTFEL------------CKICAESNKDVKIEPCGHLLCSC 373
E Q+RI + L++ M++ F + C IC +S + + PCGHL +
Sbjct: 304 EVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLFHNS 363
Query: 374 CLAAWQHSDSQTCPFCRCEIKGWEAVSIYQFHGQATAEDSGNSSDQEGRELELGQVPLSA 433
CL +W D+ +CP CR + A+++ + +G L+ VP++A
Sbjct: 364 CLRSWLEQDT-SCPTCRMSLN--------------IADNNRVREEHQGENLDENLVPVAA 408
Query: 434 PPLPPR 439
PR
Sbjct: 409 AEGRPR 414
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo
sapiens]
Length = 1758
Score = 45.8 bits (107), Expect = 8e-05
Identities = 42/133 (31%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 350 LCKICAESNKDVKIEPC-GHLLCSCCL-AAWQHSDSQTCPFCRCEIKGWEAVSIYQFHGQ 407
LC IC + D + PC G+ C C+ A SD TCP C +A+ +F Q
Sbjct: 258 LCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQ 317
Query: 408 ATAEDSGNSSDQEGRELEL-GQVPLSAPPLPPRPDLPPRKPRNAQPKVR--LLKGNSP-- 462
A N ++ G L Q+P PP PP P P RN QP +R + + P
Sbjct: 318 AV----NNFKNETGYTKRLRKQLP---PPPPPIPPPRPLIQRNLQPLMRSPISRQQDPLM 370
Query: 463 -PAALGPQDPAPA 474
P PAP+
Sbjct: 371 IPVTSSSTHPAPS 383
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo
sapiens]
Length = 1792
Score = 45.8 bits (107), Expect = 8e-05
Identities = 42/133 (31%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 350 LCKICAESNKDVKIEPC-GHLLCSCCL-AAWQHSDSQTCPFCRCEIKGWEAVSIYQFHGQ 407
LC IC + D + PC G+ C C+ A SD TCP C +A+ +F Q
Sbjct: 258 LCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQ 317
Query: 408 ATAEDSGNSSDQEGRELEL-GQVPLSAPPLPPRPDLPPRKPRNAQPKVR--LLKGNSP-- 462
A N ++ G L Q+P PP PP P P RN QP +R + + P
Sbjct: 318 AV----NNFKNETGYTKRLRKQLP---PPPPPIPPPRPLIQRNLQPLMRSPISRQQDPLM 370
Query: 463 -PAALGPQDPAPA 474
P PAP+
Sbjct: 371 IPVTSSSTHPAPS 383
>gi|66571327 ring finger protein 213 [Homo sapiens]
Length = 3280
Score = 45.4 bits (106), Expect = 1e-04
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 351 CKICAESNKDVKIEPCGHLLCSCCLAAWQHSDSQTCPFCRCEIKGWEAVSIYQFHGQA 408
C IC KD PC H+ C CL AW S+ CP+C + + ++ Q H +A
Sbjct: 2070 CSICLGDAKDPVCLPCDHVHCLRCLRAWFASEQMICPYCLTALPDEFSPAVSQAHREA 2127
>gi|21389515 ring finger protein 145 [Homo sapiens]
Length = 691
Score = 44.7 bits (104), Expect = 2e-04
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 349 ELCKICAESNKDVKIEPCGHLLCSCCLAAWQHSDSQTCPFCRCEIK 394
++C IC + K I PC H + CL W + +TCP C C +K
Sbjct: 563 DICAICYQDMKSAVITPCSHFFHAGCLKKWLYV-QETCPLCHCHLK 607
>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens]
Length = 744
Score = 44.3 bits (103), Expect = 2e-04
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 344 MDSTFELCKICAESNKDVKIEPCGHLLCSCCLAAW--QHSDSQTCPFCR 390
+D F +C IC E K+ K+ PC H C CL + HS + +CP CR
Sbjct: 16 IDKQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCR 64
>gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens]
Length = 771
Score = 44.3 bits (103), Expect = 2e-04
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 344 MDSTFELCKICAESNKDVKIEPCGHLLCSCCLAAW--QHSDSQTCPFCR 390
+D F +C IC E K+ K+ PC H C CL + HS + +CP CR
Sbjct: 43 IDKQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCR 91
>gi|239048909 checkpoint with forkhead and ring finger domains
isoform 5 [Homo sapiens]
Length = 572
Score = 42.4 bits (98), Expect = 0.001
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 278 VSSD--GSILQTIPANKPLSQVLLEGQKDGFYLYPDGKTH--NPDLTELGQ---AEPQQR 330
V+SD S +P K S LE Q D L P K + DL GQ A+P++
Sbjct: 130 VASDEVSSFASALPDRKTASFSSLEPQ-DQEDLEPVKKKMRGDGDLDLNGQLLVAQPRRN 188
Query: 331 IHVSEEQLQLYWAMDSTFE---LCKICAESNKD-VKIEPCGHLLCSCCLAAWQHSDSQTC 386
E ++ E C IC + D V ++PC H C+ C + W S C
Sbjct: 189 AQTVHEDVRAAAGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMER-SSLC 247
Query: 387 PFCRCEIK 394
P CRC ++
Sbjct: 248 PTCRCPVE 255
>gi|239048905 checkpoint with forkhead and ring finger domains
isoform 3 [Homo sapiens]
Length = 652
Score = 42.4 bits (98), Expect = 0.001
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 278 VSSD--GSILQTIPANKPLSQVLLEGQKDGFYLYPDGKTH--NPDLTELGQ---AEPQQR 330
V+SD S +P K S LE Q D L P K + DL GQ A+P++
Sbjct: 210 VASDEVSSFASALPDRKTASFSSLEPQ-DQEDLEPVKKKMRGDGDLDLNGQLLVAQPRRN 268
Query: 331 IHVSEEQLQLYWAMDSTFE---LCKICAESNKD-VKIEPCGHLLCSCCLAAWQHSDSQTC 386
E ++ E C IC + D V ++PC H C+ C + W S C
Sbjct: 269 AQTVHEDVRAAAGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMER-SSLC 327
Query: 387 PFCRCEIK 394
P CRC ++
Sbjct: 328 PTCRCPVE 335
>gi|239048862 checkpoint with forkhead and ring finger domains
isoform 2 [Homo sapiens]
Length = 663
Score = 42.4 bits (98), Expect = 0.001
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 278 VSSD--GSILQTIPANKPLSQVLLEGQKDGFYLYPDGKTH--NPDLTELGQ---AEPQQR 330
V+SD S +P K S LE Q D L P K + DL GQ A+P++
Sbjct: 222 VASDEVSSFASALPDRKTASFSSLEPQ-DQEDLEPVKKKMRGDGDLDLNGQLLVAQPRRN 280
Query: 331 IHVSEEQLQLYWAMDSTFE---LCKICAESNKD-VKIEPCGHLLCSCCLAAWQHSDSQTC 386
E ++ E C IC + D V ++PC H C+ C + W S C
Sbjct: 281 AQTVHEDVRAAAGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMER-SSLC 339
Query: 387 PFCRCEIK 394
P CRC ++
Sbjct: 340 PTCRCPVE 347
>gi|239048792 checkpoint with forkhead and ring finger domains
isoform 1 [Homo sapiens]
Length = 664
Score = 42.4 bits (98), Expect = 0.001
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 278 VSSD--GSILQTIPANKPLSQVLLEGQKDGFYLYPDGKTH--NPDLTELGQ---AEPQQR 330
V+SD S +P K S LE Q D L P K + DL GQ A+P++
Sbjct: 222 VASDEVSSFASALPDRKTASFSSLEPQ-DQEDLEPVKKKMRGDGDLDLNGQLLVAQPRRN 280
Query: 331 IHVSEEQLQLYWAMDSTFE---LCKICAESNKD-VKIEPCGHLLCSCCLAAWQHSDSQTC 386
E ++ E C IC + D V ++PC H C+ C + W S C
Sbjct: 281 AQTVHEDVRAAAGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMER-SSLC 339
Query: 387 PFCRCEIK 394
P CRC ++
Sbjct: 340 PTCRCPVE 347
>gi|239048907 checkpoint with forkhead and ring finger domains
isoform 4 [Homo sapiens]
Length = 623
Score = 42.4 bits (98), Expect = 0.001
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 278 VSSD--GSILQTIPANKPLSQVLLEGQKDGFYLYPDGKTH--NPDLTELGQ---AEPQQR 330
V+SD S +P K S LE Q D L P K + DL GQ A+P++
Sbjct: 181 VASDEVSSFASALPDRKTASFSSLEPQ-DQEDLEPVKKKMRGDGDLDLNGQLLVAQPRRN 239
Query: 331 IHVSEEQLQLYWAMDSTFE---LCKICAESNKD-VKIEPCGHLLCSCCLAAWQHSDSQTC 386
E ++ E C IC + D V ++PC H C+ C + W S C
Sbjct: 240 AQTVHEDVRAAAGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMER-SSLC 298
Query: 387 PFCRCEIK 394
P CRC ++
Sbjct: 299 PTCRCPVE 306
>gi|14149702 ring finger protein 167 [Homo sapiens]
Length = 350
Score = 42.0 bits (97), Expect = 0.001
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 329 QRIHVSEEQLQLYWAMD----STFELCKICAESNKD---VKIEPCGHLLCSCCLAAWQHS 381
QR +++EQL+ D +++C IC + +D +++ PC H S C+ W
Sbjct: 204 QRNRLTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQ 263
Query: 382 DSQTCPFCRCEIKGWEAVSIYQFHGQATAE-DSGNSSDQEGRELELGQVPL--SAPPLP 437
+TCP C+ + + Q E D G D E + PL S+P LP
Sbjct: 264 TRKTCPICKQPVHRGPGDEDQEEETQGQEEGDEGEPRDHPASE----RTPLLGSSPTLP 318
>gi|30794216 tripartite motif-containing 56 [Homo sapiens]
Length = 755
Score = 41.6 bits (96), Expect = 0.002
Identities = 20/48 (41%), Positives = 22/48 (45%)
Query: 343 AMDSTFELCKICAESNKDVKIEPCGHLLCSCCLAAWQHSDSQTCPFCR 390
A+ S F CKIC E + K PC H C CLA CP CR
Sbjct: 13 ALSSDFLACKICLEQLRAPKTLPCLHTYCQDCLAQLADGGRVRCPECR 60
>gi|31377566 ring finger protein 168 [Homo sapiens]
Length = 571
Score = 41.2 bits (95), Expect = 0.002
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 351 CKICAESNKDVKIEPCGHLLCSCCLAAWQHSDSQTCPFCRCEIKGW 396
C IC E + PC H LC C + S CPFCR + W
Sbjct: 16 CGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSW 61
>gi|148839382 ring finger protein 169 [Homo sapiens]
Length = 708
Score = 41.2 bits (95), Expect = 0.002
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Query: 351 CKICAESNKDVKIEPCGHLLCSCCLAAWQHSDSQTCPFCRCEIKGWEAVSIYQFHGQATA 410
C C E + PCGH LC C + CP CR GW A + GQA +
Sbjct: 68 CAGCLEPPGEAAALPCGHSLCRGCAQRAADAAGPGCPRCRARGPGW-ARRRARDDGQADS 126
Query: 411 EDSGNSSDQEGRELELGQVPLSAPPLPPRPDLPPR 445
E G + + E + A PRP+ PR
Sbjct: 127 EVLGECARRSQPERCRPRRDGGAAAAGPRPEQEPR 161
>gi|58331204 ring finger protein 150 [Homo sapiens]
Length = 438
Score = 40.8 bits (94), Expect = 0.003
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 345 DSTFELCKICAESNKD---VKIEPCGHLLCSCCLAAWQHSDSQTCPFCRCEI 393
+S F+ C +C E K V+I PC HL C+ W D +TCP C+ I
Sbjct: 272 ESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWL-LDHRTCPMCKMNI 322
>gi|11545910 livin inhibitor of apoptosis isoform beta [Homo
sapiens]
Length = 280
Score = 40.4 bits (93), Expect = 0.004
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 14/87 (16%)
Query: 317 PDLTELGQAE-PQQRIHVSEEQLQLYWAMDSTFEL--------CKICAESNKDVKIEPCG 367
P + G E P R V E Q A D +L CK+C + + PCG
Sbjct: 191 PSVPASGYPELPTPRREVQSESAQEPGARDVEAQLRRLQEERTCKVCLDRAVSIVFVPCG 250
Query: 368 HLLCSCCLAAWQHSDSQTCPFCRCEIK 394
HL+C+ C Q CP CR ++
Sbjct: 251 HLVCAECAPG-----LQLCPICRAPVR 272
>gi|87241872 ring finger protein 151 [Homo sapiens]
Length = 245
Score = 40.0 bits (92), Expect = 0.005
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 345 DSTFELCKICAESNKDVKIEPCGHLLCSCCLAAWQHSDSQTCPFCRCEIK 394
DS F +C +C K PC H+ C C+ W + +TCP CR E+K
Sbjct: 15 DSNF-VCSVCHGVLKRPARLPCSHIFCKKCILRWL-ARQKTCPCCRKEVK 62
>gi|32454739 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 39.7 bits (91), Expect = 0.006
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 344 MDSTFELCKICAESNKDVKIEPCGHLLCSCCLAAWQHSDSQT--CPFCR 390
MD F +C IC + + K+ PC H C CL + + S T CP CR
Sbjct: 15 MDKQFLVCSICLDRYQCPKVLPCLHTFCERCLQNYIPAQSLTLSCPVCR 63
>gi|32454737 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 39.7 bits (91), Expect = 0.006
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 344 MDSTFELCKICAESNKDVKIEPCGHLLCSCCLAAWQHSDSQT--CPFCR 390
MD F +C IC + + K+ PC H C CL + + S T CP CR
Sbjct: 15 MDKQFLVCSICLDRYQCPKVLPCLHTFCERCLQNYIPAQSLTLSCPVCR 63
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,147,809
Number of Sequences: 37866
Number of extensions: 1173830
Number of successful extensions: 9705
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 247
Number of HSP's that attempted gapping in prelim test: 8814
Number of HSP's gapped (non-prelim): 1003
length of query: 474
length of database: 18,247,518
effective HSP length: 106
effective length of query: 368
effective length of database: 14,233,722
effective search space: 5238009696
effective search space used: 5238009696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.