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Search of human proteins with 194353993
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194353993 apolipoprotein L domain containing 1 isoform 2
[Homo sapiens]
(248 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|194353993 apolipoprotein L domain containing 1 isoform 2 [Hom... 480 e-136
gi|194353995 apolipoprotein L domain containing 1 isoform 1 [Hom... 478 e-135
gi|13449281 apolipoprotein L6 [Homo sapiens] 58 9e-09
gi|22035646 apolipoprotein L3 isoform 1 [Homo sapiens] 55 4e-08
gi|19923626 apolipoprotein L4 isoform 1 [Homo sapiens] 54 2e-07
gi|22035657 apolipoprotein L4 isoform 2 precursor [Homo sapiens] 54 2e-07
gi|13562090 apolipoprotein L2 [Homo sapiens] 50 2e-06
gi|22035653 apolipoprotein L2 [Homo sapiens] 50 2e-06
gi|211938442 apolipoprotein L1 isoform c precursor [Homo sapiens] 46 3e-05
gi|211938440 apolipoprotein L1 isoform a precursor [Homo sapiens] 46 3e-05
gi|21735616 apolipoprotein L1 isoform b precursor [Homo sapiens] 46 3e-05
gi|21735614 apolipoprotein L1 isoform a precursor [Homo sapiens] 46 3e-05
gi|13470094 apolipoprotein L5 [Homo sapiens] 42 5e-04
gi|22035650 apolipoprotein L3 isoform 3 [Homo sapiens] 36 0.027
gi|22035648 apolipoprotein L3 isoform 3 [Homo sapiens] 36 0.027
gi|13446229 mesoderm development candidate 1 [Homo sapiens] 34 0.14
gi|42516561 ubiquitin specific protease 33 isoform 3 [Homo sapiens] 30 2.0
gi|42516567 ubiquitin specific protease 33 isoform 1 [Homo sapiens] 30 2.0
gi|42516565 ubiquitin specific protease 33 isoform 2 [Homo sapiens] 30 2.0
gi|46195755 SCAN domain containing 3 [Homo sapiens] 30 2.5
gi|14249254 EF-hand calcium binding domain 4B isoform c [Homo sa... 29 4.3
gi|222418793 EF-hand calcium binding domain 4B isoform b [Homo s... 29 4.3
gi|222418791 EF-hand calcium binding domain 4B isoform a [Homo s... 29 4.3
gi|13129128 hypothetical protein LOC79095 [Homo sapiens] 29 4.3
gi|169173396 PREDICTED: hypothetical protein [Homo sapiens] 28 5.7
gi|169172588 PREDICTED: hypothetical protein [Homo sapiens] 28 5.7
gi|169172986 PREDICTED: hypothetical protein [Homo sapiens] 28 5.7
gi|116089276 tetratricopeptide repeat domain 23-like [Homo sapiens] 28 7.4
gi|221136814 coiled-coil domain containing 154 [Homo sapiens] 28 9.7
gi|54606888 hypothetical protein LOC23251 [Homo sapiens] 28 9.7
>gi|194353993 apolipoprotein L domain containing 1 isoform 2 [Homo
sapiens]
Length = 248
Score = 480 bits (1236), Expect = e-136
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MGMERPAAREPHGPDALRRFQGLLLDRRGRLHGQVLRLREVARRLERLRRRSLVANVAGS 60
MGMERPAAREPHGPDALRRFQGLLLDRRGRLHGQVLRLREVARRLERLRRRSLVANVAGS
Sbjct: 1 MGMERPAAREPHGPDALRRFQGLLLDRRGRLHGQVLRLREVARRLERLRRRSLVANVAGS 60
Query: 61 SLSATGALAAIVGLSLSPVTLGTSLLVSAVGLGVATAGGAVTITSDLSLIFCNSRELRRV 120
SLSATGALAAIVGLSLSPVTLGTSLLVSAVGLGVATAGGAVTITSDLSLIFCNSRELRRV
Sbjct: 61 SLSATGALAAIVGLSLSPVTLGTSLLVSAVGLGVATAGGAVTITSDLSLIFCNSRELRRV 120
Query: 121 QEIAATCQDQMREILSCLEFFCRWQGCGDRQLLQCGRNASIALYNSVYFIVFFGSRGFLI 180
QEIAATCQDQMREILSCLEFFCRWQGCGDRQLLQCGRNASIALYNSVYFIVFFGSRGFLI
Sbjct: 121 QEIAATCQDQMREILSCLEFFCRWQGCGDRQLLQCGRNASIALYNSVYFIVFFGSRGFLI 180
Query: 181 PRRAEGDTKVSQAVLKAKIQKLAESLESCTGALDELSEQLESRVQLCTKSSRGHDLKISA 240
PRRAEGDTKVSQAVLKAKIQKLAESLESCTGALDELSEQLESRVQLCTKSSRGHDLKISA
Sbjct: 181 PRRAEGDTKVSQAVLKAKIQKLAESLESCTGALDELSEQLESRVQLCTKSSRGHDLKISA 240
Query: 241 DQRAGLFF 248
DQRAGLFF
Sbjct: 241 DQRAGLFF 248
>gi|194353995 apolipoprotein L domain containing 1 isoform 1 [Homo
sapiens]
Length = 279
Score = 478 bits (1231), Expect = e-135
Identities = 247/247 (100%), Positives = 247/247 (100%)
Query: 2 GMERPAAREPHGPDALRRFQGLLLDRRGRLHGQVLRLREVARRLERLRRRSLVANVAGSS 61
GMERPAAREPHGPDALRRFQGLLLDRRGRLHGQVLRLREVARRLERLRRRSLVANVAGSS
Sbjct: 33 GMERPAAREPHGPDALRRFQGLLLDRRGRLHGQVLRLREVARRLERLRRRSLVANVAGSS 92
Query: 62 LSATGALAAIVGLSLSPVTLGTSLLVSAVGLGVATAGGAVTITSDLSLIFCNSRELRRVQ 121
LSATGALAAIVGLSLSPVTLGTSLLVSAVGLGVATAGGAVTITSDLSLIFCNSRELRRVQ
Sbjct: 93 LSATGALAAIVGLSLSPVTLGTSLLVSAVGLGVATAGGAVTITSDLSLIFCNSRELRRVQ 152
Query: 122 EIAATCQDQMREILSCLEFFCRWQGCGDRQLLQCGRNASIALYNSVYFIVFFGSRGFLIP 181
EIAATCQDQMREILSCLEFFCRWQGCGDRQLLQCGRNASIALYNSVYFIVFFGSRGFLIP
Sbjct: 153 EIAATCQDQMREILSCLEFFCRWQGCGDRQLLQCGRNASIALYNSVYFIVFFGSRGFLIP 212
Query: 182 RRAEGDTKVSQAVLKAKIQKLAESLESCTGALDELSEQLESRVQLCTKSSRGHDLKISAD 241
RRAEGDTKVSQAVLKAKIQKLAESLESCTGALDELSEQLESRVQLCTKSSRGHDLKISAD
Sbjct: 213 RRAEGDTKVSQAVLKAKIQKLAESLESCTGALDELSEQLESRVQLCTKSSRGHDLKISAD 272
Query: 242 QRAGLFF 248
QRAGLFF
Sbjct: 273 QRAGLFF 279
>gi|13449281 apolipoprotein L6 [Homo sapiens]
Length = 343
Score = 57.8 bits (138), Expect = 9e-09
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 17 LRRFQGLLLDRRGRLHGQVLRLREVARRLERLRRRSLVANVAGSSLSATGALAAIVGLSL 76
LR F L D L G + +LR +A +++ ++ AN+ +S + + +++GL+L
Sbjct: 43 LREFPRLKED----LKGNIDKLRALADDIDKTHKKFTKANMVATSTAVISGVMSLLGLAL 98
Query: 77 SPVTLGTSLLVSAVGLGVATAGGAVTITSDLSLIFCNSRELRRVQEIAATCQDQMRE 133
+P T G SLL+S G G+ATA G +I S N R ++I T + RE
Sbjct: 99 APATGGGSLLLSTAGQGLATAAGVTSIVSGTLERSKNKEAQARAEDILPTYDQEDRE 155
>gi|22035646 apolipoprotein L3 isoform 1 [Homo sapiens]
Length = 402
Score = 55.5 bits (132), Expect = 4e-08
Identities = 29/103 (28%), Positives = 52/103 (50%)
Query: 30 RLHGQVLRLREVARRLERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGTSLLVSA 89
++ + +LR +A +E + R ++NV SS A + ++ GL L+P T GTSL ++A
Sbjct: 162 KIQESIEKLRALANGIEEVHRGCTISNVVSSSTGAASGIMSLAGLVLAPFTAGTSLALTA 221
Query: 90 VGLGVATAGGAVTITSDLSLIFCNSRELRRVQEIAATCQDQMR 132
G+G+ A IT+ + S + AT D+++
Sbjct: 222 AGVGLGAASAVTGITTSIVEHSYTSSAEAEASRLTATSIDRLK 264
>gi|19923626 apolipoprotein L4 isoform 1 [Homo sapiens]
Length = 348
Score = 53.5 bits (127), Expect = 2e-07
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 28 RGRLHGQVLRLREVARRLERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGTSLLV 87
R ++ + RLR +A +E++ R ++ANV S TG L +++G+ L+P T G SL +
Sbjct: 113 RWKIQESIERLRVIANEIEKVHRGCVIANVVSGS---TGIL-SVIGVMLAPFTAGLSLSI 168
Query: 88 SAVGLGVATAGGAVTITSDL-SLIFCNSRELRRVQEIAATCQDQMREILSCL 138
+A G+G+ A I S + + S EL + AT DQ+ + L
Sbjct: 169 TAAGVGLGIASATAGIASSIVENTYTRSAEL-TASRLTATSTDQLEALRDIL 219
>gi|22035657 apolipoprotein L4 isoform 2 precursor [Homo sapiens]
Length = 351
Score = 53.5 bits (127), Expect = 2e-07
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 28 RGRLHGQVLRLREVARRLERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGTSLLV 87
R ++ + RLR +A +E++ R ++ANV S TG L +++G+ L+P T G SL +
Sbjct: 116 RWKIQESIERLRVIANEIEKVHRGCVIANVVSGS---TGIL-SVIGVMLAPFTAGLSLSI 171
Query: 88 SAVGLGVATAGGAVTITSDL-SLIFCNSRELRRVQEIAATCQDQMREILSCL 138
+A G+G+ A I S + + S EL + AT DQ+ + L
Sbjct: 172 TAAGVGLGIASATAGIASSIVENTYTRSAEL-TASRLTATSTDQLEALRDIL 222
>gi|13562090 apolipoprotein L2 [Homo sapiens]
Length = 337
Score = 50.1 bits (118), Expect = 2e-06
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 31 LHGQVLRLREVARRLERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGTSLLVSAV 90
L + +LR +A +E++ R + +ANV +S+ T + ++GL L+P T G S ++
Sbjct: 92 LEDHIRKLRALAEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLAPFTEGISFVLLDT 151
Query: 91 GLGVATAGGAVTIT 104
G+G+ A IT
Sbjct: 152 GMGLGAAAAVAGIT 165
>gi|22035653 apolipoprotein L2 [Homo sapiens]
Length = 337
Score = 50.1 bits (118), Expect = 2e-06
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 31 LHGQVLRLREVARRLERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGTSLLVSAV 90
L + +LR +A +E++ R + +ANV +S+ T + ++GL L+P T G S ++
Sbjct: 92 LEDHIRKLRALAEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLAPFTEGISFVLLDT 151
Query: 91 GLGVATAGGAVTIT 104
G+G+ A IT
Sbjct: 152 GMGLGAAAAVAGIT 165
>gi|211938442 apolipoprotein L1 isoform c precursor [Homo sapiens]
Length = 380
Score = 46.2 bits (108), Expect = 3e-05
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 28 RGRLHGQVLRLREVARRLERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGTSLLV 87
+ L + RLR +A ++++ + + +ANV SLS + + +VG+ L+P T G SL++
Sbjct: 130 KSELEDNIRRLRALADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVL 189
Query: 88 SAVGLGVATAGGAVTITS 105
G+ + ITS
Sbjct: 190 LEPGMELGITAALTGITS 207
>gi|211938440 apolipoprotein L1 isoform a precursor [Homo sapiens]
Length = 398
Score = 46.2 bits (108), Expect = 3e-05
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 28 RGRLHGQVLRLREVARRLERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGTSLLV 87
+ L + RLR +A ++++ + + +ANV SLS + + +VG+ L+P T G SL++
Sbjct: 148 KSELEDNIRRLRALADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVL 207
Query: 88 SAVGLGVATAGGAVTITS 105
G+ + ITS
Sbjct: 208 LEPGMELGITAALTGITS 225
>gi|21735616 apolipoprotein L1 isoform b precursor [Homo sapiens]
Length = 414
Score = 46.2 bits (108), Expect = 3e-05
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 28 RGRLHGQVLRLREVARRLERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGTSLLV 87
+ L + RLR +A ++++ + + +ANV SLS + + +VG+ L+P T G SL++
Sbjct: 164 KSELEDNIRRLRALADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVL 223
Query: 88 SAVGLGVATAGGAVTITS 105
G+ + ITS
Sbjct: 224 LEPGMELGITAALTGITS 241
>gi|21735614 apolipoprotein L1 isoform a precursor [Homo sapiens]
Length = 398
Score = 46.2 bits (108), Expect = 3e-05
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 28 RGRLHGQVLRLREVARRLERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGTSLLV 87
+ L + RLR +A ++++ + + +ANV SLS + + +VG+ L+P T G SL++
Sbjct: 148 KSELEDNIRRLRALADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVL 207
Query: 88 SAVGLGVATAGGAVTITS 105
G+ + ITS
Sbjct: 208 LEPGMELGITAALTGITS 225
>gi|13470094 apolipoprotein L5 [Homo sapiens]
Length = 433
Score = 42.0 bits (97), Expect = 5e-04
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 46 ERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGTSLLVSAVGLGVATAGGAVTITS 105
E L + SLVA+ +G A + I+GL+L+PVT G SL++SA G G+ A I +
Sbjct: 132 ELLTKTSLVASSSG----AVSGVMNILGLALAPVTAGGSLMLSATGTGLGAAAAITNIVT 187
Query: 106 DL 107
++
Sbjct: 188 NV 189
>gi|22035650 apolipoprotein L3 isoform 3 [Homo sapiens]
Length = 202
Score = 36.2 bits (82), Expect = 0.027
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 70 AIVGLSLSPVTLGTSLLVSAVGLGVATAGGAVTITSDLSLIFCNSRELRRVQEIAATCQD 129
++ GL L+P T GTSL ++A G+G+ A IT+ + S + AT D
Sbjct: 2 SLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAEASRLTATSID 61
Query: 130 QMR 132
+++
Sbjct: 62 RLK 64
>gi|22035648 apolipoprotein L3 isoform 3 [Homo sapiens]
Length = 202
Score = 36.2 bits (82), Expect = 0.027
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 70 AIVGLSLSPVTLGTSLLVSAVGLGVATAGGAVTITSDLSLIFCNSRELRRVQEIAATCQD 129
++ GL L+P T GTSL ++A G+G+ A IT+ + S + AT D
Sbjct: 2 SLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAEASRLTATSID 61
Query: 130 QMR 132
+++
Sbjct: 62 RLK 64
>gi|13446229 mesoderm development candidate 1 [Homo sapiens]
Length = 362
Score = 33.9 bits (76), Expect = 0.14
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 67 ALAAIVGLSLSPVTLGTSLLVSAVGLGVATA--GGAVTITSDLSLIFCNSRELRRVQEIA 124
A++A+VG + P LG + VSA G V TA GGA+++ S L+ R+L + +
Sbjct: 257 AVSALVGFATEPQFLGRAAAVSAEGKAVQTAILGGAMSVVSACVLLTQCLRDLAQHPDGG 316
Query: 125 ATCQDQMREI 134
A D +
Sbjct: 317 AKMSDHRERL 326
>gi|42516561 ubiquitin specific protease 33 isoform 3 [Homo sapiens]
Length = 828
Score = 30.0 bits (66), Expect = 2.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 120 VQEIAATCQD---QMREILSCLEFFCRWQGCGDRQL 152
+Q+ TCQD Q + +CLE C + GCG+ Q+
Sbjct: 54 IQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQV 89
>gi|42516567 ubiquitin specific protease 33 isoform 1 [Homo sapiens]
Length = 942
Score = 30.0 bits (66), Expect = 2.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 120 VQEIAATCQD---QMREILSCLEFFCRWQGCGDRQL 152
+Q+ TCQD Q + +CLE C + GCG+ Q+
Sbjct: 54 IQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQV 89
>gi|42516565 ubiquitin specific protease 33 isoform 2 [Homo sapiens]
Length = 911
Score = 30.0 bits (66), Expect = 2.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 120 VQEIAATCQD---QMREILSCLEFFCRWQGCGDRQL 152
+Q+ TCQD Q + +CLE C + GCG+ Q+
Sbjct: 23 IQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQV 58
>gi|46195755 SCAN domain containing 3 [Homo sapiens]
Length = 1325
Score = 29.6 bits (65), Expect = 2.5
Identities = 21/88 (23%), Positives = 40/88 (45%)
Query: 54 VANVAGSSLSATGALAAIVGLSLSPVTLGTSLLVSAVGLGVATAGGAVTITSDLSLIFCN 113
V+++ S+L A+ +A V S +P T+ +L+ + G + N
Sbjct: 812 VSHINISALRASYKVALPVAKSKTPYTIAETLVKDCIKEVCLEMLGESAAKKVAQVPLSN 871
Query: 114 SRELRRVQEIAATCQDQMREILSCLEFF 141
RR+QE+A +DQ+ E + ++F
Sbjct: 872 DTIARRIQELANDMEDQLIEQIKLAKYF 899
>gi|14249254 EF-hand calcium binding domain 4B isoform c [Homo
sapiens]
Length = 395
Score = 28.9 bits (63), Expect = 4.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 187 DTKVSQAVLKAKIQKLAESLESCTGALDELSEQLESRVQLCTKSSRGHDLKI 238
+TK LK Q+LA LE + L + +QLES Q K + ++++
Sbjct: 300 ETKAENTKLKLTNQELARELERTSWELQDAQQQLESLQQEACKLHQEKEMEV 351
>gi|222418793 EF-hand calcium binding domain 4B isoform b [Homo
sapiens]
Length = 462
Score = 28.9 bits (63), Expect = 4.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 187 DTKVSQAVLKAKIQKLAESLESCTGALDELSEQLESRVQLCTKSSRGHDLKI 238
+TK LK Q+LA LE + L + +QLES Q K + ++++
Sbjct: 300 ETKAENTKLKLTNQELARELERTSWELQDAQQQLESLQQEACKLHQEKEMEV 351
>gi|222418791 EF-hand calcium binding domain 4B isoform a [Homo
sapiens]
Length = 731
Score = 28.9 bits (63), Expect = 4.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 187 DTKVSQAVLKAKIQKLAESLESCTGALDELSEQLESRVQLCTKSSRGHDLKI 238
+TK LK Q+LA LE + L + +QLES Q K + ++++
Sbjct: 300 ETKAENTKLKLTNQELARELERTSWELQDAQQQLESLQQEACKLHQEKEMEV 351
>gi|13129128 hypothetical protein LOC79095 [Homo sapiens]
Length = 83
Score = 28.9 bits (63), Expect = 4.3
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 174 GSRGFLIPRRAEGDTKVSQAVLKAKIQKLAESLESCTGALDELSEQLESRVQLCTKSSR 232
G G + AEG+ A I + + + SC L+E ++ L +R+Q +S+R
Sbjct: 6 GDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNR 64
>gi|169173396 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 28.5 bits (62), Expect = 5.7
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 43 RRLERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGTSLLVSAVGLGVATAGGAVT 102
R ++ LR R+LV SLS + +I+G+S+ +T T +++S++ + + + +++
Sbjct: 6 RDVKALRARALVLISIIISLSIIVTVISIIGISIISIT--TLIIISSINITIISI--SIS 61
Query: 103 ITSDLSLI 110
I S +S I
Sbjct: 62 IISSISTI 69
>gi|169172588 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 28.5 bits (62), Expect = 5.7
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 43 RRLERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGTSLLVSAVGLGVATAGGAVT 102
R ++ LR R+LV SLS + +I+G+S+ +T T +++S++ + + + +++
Sbjct: 6 RDVKALRARALVLISIIISLSIIVTVISIIGISIISIT--TLIIISSINITIISI--SIS 61
Query: 103 ITSDLSLI 110
I S +S I
Sbjct: 62 IISSISTI 69
>gi|169172986 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 28.5 bits (62), Expect = 5.7
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 43 RRLERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGTSLLVSAVGLGVATAGGAVT 102
R ++ LR R+LV SLS + +I+G+S+ +T T +++S++ + + + +++
Sbjct: 6 RDVKALRARALVLISIIISLSIIVTVISIIGISIISIT--TLIIISSINITIISI--SIS 61
Query: 103 ITSDLSLI 110
I S +S I
Sbjct: 62 IISSISTI 69
>gi|116089276 tetratricopeptide repeat domain 23-like [Homo sapiens]
Length = 361
Score = 28.1 bits (61), Expect = 7.4
Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 12/123 (9%)
Query: 22 GLLLDRRGRLHGQVLRLREVARRLERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTL 81
G ++ +G ++ L E A ++E+LRR N A L ++ + +SP T
Sbjct: 241 GDVIAAKGDRTSDLISLYEEAAQIEQLRRNH---NQAIQYLQQAHSVCVSLFTEVSPKTA 297
Query: 82 GTSLLVSAVGLGVATAGGAVTITSDLSLIFCNSRELRRVQEIAATCQDQMREILSCLEFF 141
S L++ G + + F +R + AT + E LS E F
Sbjct: 298 EMSALLAKA----YAMSGEAQHRDAVEIYF-----IRSINAYRATLGSEDFETLSTTEEF 348
Query: 142 CRW 144
C+W
Sbjct: 349 CKW 351
>gi|221136814 coiled-coil domain containing 154 [Homo sapiens]
Length = 667
Score = 27.7 bits (60), Expect = 9.7
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 28 RGRLHGQVLRLREVARRLERLRRRSLVANVAGSSLSATGALAAIVG-LSLSPVTLGTSL 85
R +HG+++ LRE +R LE + VA +AG +G L A+ L L LG L
Sbjct: 375 RQEMHGELVLLREKSRALE-----ASVAQLAGQLKELSGHLPALSSRLDLQEQMLGLRL 428
Score = 27.7 bits (60), Expect = 9.7
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 185 EGDTKVSQAVLKAKIQKLAESLESCTGALDELSEQLESRVQLCTKSSRGHDLKISADQRA 244
EG + S L +++ E L +D L +Q+ES C DL+ISA+ +A
Sbjct: 436 EGAERKSLEDLARWRKEVTEHLRGVREKVDGLPQQIESVSDKCLLHKSDSDLRISAEGKA 495
Query: 245 GLF 247
F
Sbjct: 496 REF 498
>gi|54606888 hypothetical protein LOC23251 [Homo sapiens]
Length = 916
Score = 27.7 bits (60), Expect = 9.7
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 184 AEGDTKVSQAVLKAKIQKLAESLESCTGALDELSEQLESRVQLCTKSSRGHDLKISAD 241
+E + K S L +I ++ LES +G DE+S+ L +L K + + + D
Sbjct: 588 SEEELKTSVCKLVLRIGEIERKLESLSGVRDEISQVLGKLNKLDQKMQQPEKVSVQID 645
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.136 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,014,002
Number of Sequences: 37866
Number of extensions: 297880
Number of successful extensions: 1639
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1607
Number of HSP's gapped (non-prelim): 40
length of query: 248
length of database: 18,247,518
effective HSP length: 100
effective length of query: 148
effective length of database: 14,460,918
effective search space: 2140215864
effective search space used: 2140215864
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.