CBX5 10157

Name: CBX5	Sequence: fasta or formatted (191aa)		NCBI GI: 188035908
Description: heterochromatin protein 1-alpha		Referenced in: Centromere Proteins Nonhistone Chromosomal Proteins
Other entries for this name: alt mRNA [191aa] heterochromatin protein 1-alpha alt mRNA [191aa] heterochromatin protein 1-alpha
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.8 11 1 C cysteine 1.6 3 1 D aspartate 6.8 13 2 E glutamate 14.7 28 3 F phenylalanine 3.1 6 1 G glycine 4.2 8 1 H histidine 1.0 2 1 I isoleucine 3.7 7 2 K lysine 15.2 29 3 L leucine 5.8 11 2 M methionine 2.6 5 1 N asparagine 5.2 10 2 P proline 3.1 6 1 Q glutamine 1.6 3 1 R arginine 4.7 9 2 S serine 7.9 15 4 T threonine 3.7 7 1 V valine 4.7 9 2 W tryptophan 2.1 4 1 Y tyrosine 2.6 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 heterochromatin protein 1-alpha CBX5 1.000 heterochromatin protein 1-alpha CBX5 1.000 heterochromatin protein 1-alpha CBX1 0.584 heterochromatin protein 1-beta CBX1 0.584 heterochromatin protein 1-beta CBX3 0.556 chromobox homolog 3 CBX3 0.556 chromobox homolog 3 LOC100292569 0.205 PREDICTED: similar to Chromobox homolog 3 (Drosophi... LOC100289943 0.205 PREDICTED: hypothetical protein XP_002347334 LOC100288472 0.205 PREDICTED: hypothetical protein XP_002343183 CBX2 0.129 chromobox homolog 2 isoform 1 CBX2 0.123 chromobox homolog 2 isoform 2 CDYL 0.115 chromodomain protein, Y chromosome-like isoform a [... MPHOSPH8 0.110 M-phase phosphoprotein 8 CBX8 0.104 chromobox homolog 8 CBX4 0.099 chromobox homolog 4 CBX6 0.093 chromobox homolog 6 CBX7 0.090 chromobox homolog 7 CDYL2 0.088 chromodomain protein, Y-like 2 CDY1 0.082 Y chromosome chromodomain protein 1, telomeric isofor... CDY1 0.082 Y chromosome chromodomain protein 1, telomeric isofo... CDY1B 0.082 chromodomain protein, Y-linked, 1B isoform b CDY1B 0.082 chromodomain protein, Y-linked, 1B isoform a CDY2B 0.079 Y chromosome chromodomain protein 2B CDY2A 0.079 Y chromosome chromodomain protein 2A SUV39H1 0.071 suppressor of variegation 3-9 homolog 1 SUV39H2 0.066 suppressor of variegation 3-9 homolog 2 CHD2 0.058 chromodomain helicase DNA binding protein 2 isoform... CHD2 0.058 chromodomain helicase DNA binding protein 2 isoform... CHD1 0.055 chromodomain helicase DNA binding protein 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.