Guide to the Human Genome
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Name: CATSPERG Sequence: fasta or formatted (1159aa) NCBI GI: 187761334
Description:

hypothetical protein LOC57828

Referenced in:

Calcium and TRP Cation Channels
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         47           2
 C cysteine            2.1         24           1
 D aspartate           4.0         46           2
 E glutamate           6.0         70           2
 F phenylalanine       6.0         70           3
 G glycine             6.0         70           3
 H histidine           2.2         26           2
 I isoleucine          5.5         64           2
 K lysine              4.1         47           2
 L leucine            10.3        119           4
 M methionine          3.2         37           1
 N asparagine          3.9         45           2
 P proline             5.1         59           2
 Q glutamine           4.1         47           2
 R arginine            4.6         53           1
 S serine              9.1        105           2
 T threonine           5.3         61           2
 V valine              7.0         81           2
 W tryptophan          2.1         24           2
 Y tyrosine            5.5         64           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC57828 
TOMM40                0.003   translocase of outer mitochondrial membrane 40 [Hom...
TOMM40                0.003   translocase of outer mitochondrial membrane 40 [Hom...
TOMM40                0.003   translocase of outer mitochondrial membrane 40 
LOC728661             0.003   similar to solute carrier family 35, member E2 [Hom...
TMEM39B               0.003   transmembrane protein 39B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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