Guide to the Human Genome
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Name: CALR3 Sequence: fasta or formatted (384aa) NCBI GI: 187608348
Description:

calreticulin 3

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         18           1
 C cysteine            1.0          4           1
 D aspartate           7.8         30           2
 E glutamate           8.1         31           6
 F phenylalanine       5.2         20           1
 G glycine             7.0         27           3
 H histidine           3.6         14           1
 I isoleucine          5.5         21           1
 K lysine              9.9         38           2
 L leucine             8.1         31           2
 M methionine          2.1          8           1
 N asparagine          4.7         18           1
 P proline             2.9         11           2
 Q glutamine           4.9         19           1
 R arginine            4.4         17           2
 S serine              5.2         20           2
 T threonine           4.7         18           2
 V valine              3.1         12           1
 W tryptophan          2.9         11           1
 Y tyrosine            4.2         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calreticulin 3 
CALR                  0.469   calreticulin precursor 
CLGN                  0.157   calmegin 
CLGN                  0.157   calmegin 
CANX                  0.152   calnexin precursor 
CANX                  0.152   calnexin precursor 
CCDC46                0.011   coiled-coil domain containing 46 isoform a 
TDO2                  0.010   tryptophan 2,3-dioxygenase 
NR1D2                 0.008   nuclear receptor subfamily 1, group D, member 2 iso...
ZCCHC7                0.008   zinc finger, CCHC domain containing 7 
NR1D2                 0.008   nuclear receptor subfamily 1, group D, member 2 iso...
EVI1                  0.008   ecotropic viral integration site 1 isoform a 
EVI1                  0.008   ecotropic viral integration site 1 isoform b 
EVI1                  0.008   ecotropic viral integration site 1 isoform b 
PIBF1                 0.008   progesterone-induced blocking factor 1 
LEPREL2               0.006   leprecan-like 2 
SPTY2D1               0.006   SPT2, Suppressor of Ty, domain containing 1 
HNRNPU                0.006   heterogeneous nuclear ribonucleoprotein U isoform b ...
HNRNPU                0.006   heterogeneous nuclear ribonucleoprotein U isoform a ...
ZNF155                0.006   zinc finger protein 155 
ZNF155                0.006   zinc finger protein 155 
SLC24A1               0.006   solute carrier family 24 (sodium/potassium/calcium ex...
RPGR                  0.006   retinitis pigmentosa GTPase regulator isoform C [Hom...
PODXL2                0.006   podocalyxin-like 2 
DENND2A               0.006   DENN/MADD domain containing 2A 
PPP1R12A              0.005   protein phosphatase 1, regulatory (inhibitor) subun...
PPP1R12A              0.005   protein phosphatase 1, regulatory (inhibitor) subun...
PPP1R12A              0.005   protein phosphatase 1, regulatory (inhibitor) subunit...
LEPR                  0.005   leptin receptor isoform 3 
LEPR                  0.005   leptin receptor isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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