Search of human proteins with 10047116

Search of human proteins with 10047116

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10047116 RAB5-interacting protein isoform a [Homo sapiens]
         (129 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|10047116 RAB5-interacting protein isoform a [Homo sapiens]         270   2e-73
gi|41327694 RAB5-interacting protein isoform b [Homo sapiens]         152   7e-38
gi|157388900 inositol monophosphatase domain containing 1 [Homo ...    30   0.69 
gi|73747917 transporter 2, ATP-binding cassette, sub-family B is...    29   0.90 
gi|73747915 transporter 2, ATP-binding cassette, sub-family B is...    29   0.90 
gi|21361315 transmembrane 9 superfamily member 1 isoform a [Homo...    27   4.5  
gi|217416366 major facilitator superfamily domain containing 9 [...    27   4.5  
gi|4505167 N-acetylglucosaminyltransferase V [Homo sapiens]            27   5.8  
gi|215820619 zinc finger protein 646 [Homo sapiens]                    27   5.8  

>gi|10047116 RAB5-interacting protein isoform a [Homo sapiens]
          Length = 129

 Score =  270 bits (690), Expect = 2e-73
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIW 60
           MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIW
Sbjct: 1   MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIW 60

Query: 61  GVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVIWI 120
           GVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVIWI
Sbjct: 61  GVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVIWI 120

Query: 121 IFYTAIHYD 129
           IFYTAIHYD
Sbjct: 121 IFYTAIHYD 129


>gi|41327694 RAB5-interacting protein isoform b [Homo sapiens]
          Length = 143

 Score =  152 bits (384), Expect = 7e-38
 Identities = 73/73 (100%), Positives = 73/73 (100%)

Query: 1  MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIW 60
          MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIW
Sbjct: 1  MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIW 60

Query: 61 GVLPLRGFLGIAG 73
          GVLPLRGFLGIAG
Sbjct: 61 GVLPLRGFLGIAG 73


>gi|157388900 inositol monophosphatase domain containing 1 [Homo
          sapiens]
          Length = 359

 Score = 29.6 bits (65), Expect = 0.69
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 69 LGIAGFCLINAGVLYLYFSNYL 90
          LG+A FCL+  GVLY  +S +L
Sbjct: 11 LGVAVFCLLGLGVLYHLYSGFL 32


>gi|73747917 transporter 2, ATP-binding cassette, sub-family B
          isoform 2 [Homo sapiens]
          Length = 653

 Score = 29.3 bits (64), Expect = 0.90
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 56 LGVIWGVLPLRGFLGIAGFCLI 77
          LG +WG+L LRG LG  G  L+
Sbjct: 46 LGGLWGLLKLRGLLGFVGTLLL 67


>gi|73747915 transporter 2, ATP-binding cassette, sub-family B
          isoform 1 [Homo sapiens]
          Length = 703

 Score = 29.3 bits (64), Expect = 0.90
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 56 LGVIWGVLPLRGFLGIAGFCLI 77
          LG +WG+L LRG LG  G  L+
Sbjct: 46 LGGLWGLLKLRGLLGFVGTLLL 67


>gi|21361315 transmembrane 9 superfamily member 1 isoform a [Homo
           sapiens]
          Length = 606

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 55  VLGVIWG--VLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSF 112
           +   +WG     L G L      L++ G        Y Q+  E+Y   W       + S 
Sbjct: 485 IFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLS--VGST 542

Query: 113 ALFMVIWIIFYTA 125
            LF+ ++ +FY A
Sbjct: 543 GLFIFLYSVFYYA 555


>gi|217416366 major facilitator superfamily domain containing 9
           [Homo sapiens]
          Length = 474

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 18/84 (21%), Positives = 43/84 (51%), Gaps = 11/84 (13%)

Query: 30  RSDAAWEDKDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLGIAGFCLINAGVLYLYFSNY 89
           R+ A+ +    +++V+   R +  ++   +W +  +R         L+ A  + LY+SN+
Sbjct: 256 RARASKKTAQPWVEVVLALRNMKNLLFSEMWDIFLVR---------LLMAMAVMLYYSNF 306

Query: 90  LQIDEEEYGGTWELTKEGFMTSFA 113
           +   EE +G   ++T  G++ S++
Sbjct: 307 VLALEERFGVRPKVT--GYLISYS 328


>gi|4505167 N-acetylglucosaminyltransferase V [Homo sapiens]
          Length = 741

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 3/34 (8%)

Query: 24  VWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLG 57
           V+ KV   D+ W++K  +LD+I+ + ++ A V G
Sbjct: 451 VYGKV---DSFWKNKKIYLDIIHTYMEVHATVYG 481


>gi|215820619 zinc finger protein 646 [Homo sapiens]
          Length = 1832

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 4   GRRKEEPPQPQ-----LANGALKVSVWSKVLRSDAAWEDK 38
           GRR+  PP+P+     L    +    W + L S   WE++
Sbjct: 101 GRRRHRPPRPKEATPHLQGETVSTDSWGQRLGSSEGWENQ 140


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.144    0.471 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,343,519
Number of Sequences: 37866
Number of extensions: 205726
Number of successful extensions: 492
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 9
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.